VPatho
Category: [Genome-wide variants]
Description: Prediction of pathogenicity and function impact of variants.
Journal: Briefings in Bioinformatics
DOI:  10.1093/bib/bbad019
Year: 2022

MMPatho
Category: [Genome-wide variants]
Description: Prediction of pathogenicity and function impact of missense mutation.
Journal: Journal of Chemical Information and Modeling
DOI:  10.1021/acs.jcim.3c00950
Year: 2023

Stoploga
Category: [Genome-wide variants]
Description: Stop lost and stop gained variation.
Journal: Sumbitted
DOI:  10.1093/bioinformatics/babbXXX
Year: 2023

FFMSRes-MutP
Category: [Mutations prediction]
Description: Prediction of disease-related nsSNPs by integrating deep feature fusion and multi-scale ResNet.
Journal: Briefings in Bioinformatics
DOI:  10.1093/bib/bbab530
Year: 2022

MutTMpredictor
Category: [Mutations prediction]
Description: Disease-related mutations prediction in transmembrane protein.
Journal: Computational and Structural Biotechnology Journal
DOI:  10.1016/j.csbj.2021.11.024
Year: 2021

csORF-finder
Category: [Identification of coding sORFs]
Description: framework for accurate identification of multi-species coding short open reading frames.
Journal: Briefings in Bioinformatics
DOI:  10.1093/bib/bbac392
Year: 2022

PROST
Category: [Mutations upon protein stability]
Description:AlphaFold2-aware Sequence-Based Predictor to Estimate Protein Stability Changes upon Missense Mutations.
Journal: Journal of Chemical Information and Modeling
DOI:  10.1021/acs.jcim.2c00799
Year: 2022

SSCpred
Category: [Protein Contact Map]
Description: Single-Sequence-Based Protein Contact Prediction Using Deep Fully Convolutional Network.
Journal: Journal of Chemical Information and Modeling
DOI:  10.1021/acs.jcim.9b01207
Year: 2020

DCFCrystal
Category: [Protein Crystallization]
Description: Predicting Protein Crystallization.
Journal: Briefings in Bioinformatics
DOI: 10.1093/bib/bbaa076
Year: 2021

mrmbert
Category: [RNA modifications]
Description: Prediction of multiple types of RNA modifications via biological language model.
Journal: IEEE TCBB
DOI:  10.1109/TCBB.2023.3283985
Year: 2023

DeepnsSNPs
Category: [Mutations prediction]
Description: Single-nucleotide Polymorphisms by Combining Multi-scale Convolutional Neural Network.
Journal: Chemometrics and Intelligent Laboratory Systems
DOI: 10.1016/j.chemolab.2021.104326
Year: 2021

TargetMM
Category: [Mutations prediction]
Description: Accurate Missense Mutation Prediction by Utilizing Local and Global Sequence Information with Classifier Ensemble.
Journal: Combinatorial Chemistry & High Throughput Screening
DOI: 10.2174/1386207323666201204140438
Year: 2022